The AspGD Proteome Browser displays primary structural information for AspGD proteins. It is adapted from the Proteome Browser developed at the Saccharomyces Genome Database, and is a customized version of GBrowse, a genome browser developed by the Generic Model Organism Database (GMOD) project. The information displayed by the AspGD Proteome Browser was generated by searching the organism's protein sequences against the InterPro database of protein domains, motifs and other sequence signatures, using the InterProScan program. Features are displayed according to their position in the protein's primary structure. Hovering the mouse cursor over a feature brings up basic information such as feature type and significance score, and clicking on it links-out to a detailed description provided by the relevant InterPro member database.
The page is organized into sections for navigating the browser and controlling the level of detail it presents. These sections can be hidden or displayed by clicking on the box on the left (labeled "-" or "+", respectively). The different sections are:
Graduated scale showing full length of protein. Red box indicates the region of the protein shown in Details window, controlled by Scroll/Zoom option in the Search section. Clicking on the scale re-centers the red box/Details window.
Presents feature information in tracks along the primary structure of the protein. The lower four tracks display features detected by searching the protein sequence using the InterProScan program.
Allows user control over which tracks are displayed n the Details window, as well as their display order.
Allows user control over the appearance of the Details window, including size, labeling and highlighting.
Allows the addition of user-defined tracks in the Details window, either via an uploaded file or remote URL.
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AspGD Copyright © 2008-2013 The Board of Trustees, Leland Stanford Junior University, and Broad Institute.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2013). The Aspergillus Genome Database (AspGD): multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res. 42(Database issue):D705-D710; see How to cite AspGD.