The AspGD Protein Information Page provides basic property, structure, and homology information for all verified or predicted AspGD proteins. The primary information is listed in the major column on the left of the page, and includes links to interactive displays and other data resources.
The top of the protein page provides a site-wide quick search, links to the major AspGD informational resources, and a bar with links to popular tools, such as a local BLAST search. Beneath this is a series of tabs linking to other locus-specific information pages, including Locus Summary, Locus History, Literature, Gene Ontology, and Phenotype.
Individual sections can be expanded or collapsed (hidden) by clicking on the small +/- icons next to the section headings.
Standard Name and Systematic Name:
The protein names are based upon the gene names found on the Locus Summary page (A. nidulans gene naming guidelines are described in the Gene Nomenclature Guide). Standard protein names for Aspergillus nidulans are non-italicized, and are derived from the corresponding standard gene name by making the first character uppercase. For the systematic protein name, the first character is uppercase and the remaining alphabetic characters are lowercase. For example, the protein encoded by the gene veA (systematic name AN1052) has standard name VeA and systematic name An1052. See the AspGD Sequence Documentation Page for more details.
A concise summary of the biological role and molecular function of the protein.
Summary of the predicted ORF translation, including:
Provides links to AspGD resources that can be used to identify homologs of the query protein:
Provides links to various other databases containing the protein sequence.
This section lists the references used to curate information displayed in the Standard Name, Systematic Name, and Description fields on the page. Note that this section is not a comprehensive listing of publications relevant to this gene. To retrieve a list of all publications annotated to this gene, select the "Literature" tab at the top of the page.
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AspGD Copyright © 2008-2013 The Board of Trustees, Leland Stanford Junior University, and Broad Institute.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2013). The Aspergillus Genome Database (AspGD): multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res. 42(Database issue):D705-D710; see How to cite AspGD.